H. pylori, explained by the surgeon who scopes for it
H. pylori often causes no symptoms. That does not make it benign.
H. pylori is a spiral-shaped bacterium that colonises the stomach lining and the duodenum. The majority of people who carry it have no symptoms, which is why it is one of the most underdiagnosed conditions I encounter. In my experience performing gastroscopies, up to 30% of patients who come in for an upper GI assessment turn out to have it.
Written by Dr Sulaiman Bin Yusof, Senior Consultant Colorectal and General Surgeon. MBChB (Sheffield), M.Med (Surgery), FRCSEd (General Surgery).
The absence of symptoms does not mean the infection is benign. In this article I explain what H. pylori is, how common it is in Singapore, why a silent infection still matters, the four ways to test for it, and what eradication treatment involves.
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What the numbers say
What the numbers say
Up to 30%
Of his upper GI gastroscopies
Source: Dr Sulaiman Bin Yusof, clinical practice
31%
Seroprevalence in Singapore
Source: Chew and colleagues, Singapore Medical Journal, 2017
H. pylori in Singapore, per 100 people
- Carry the infection
- About 31
- Do not
- About 69
Source: Chew and colleagues, Singapore Medical Journal, 2017
Group 1
Carcinogen classification
Source: International Agency for Research on Cancer, the World Health Organisation's cancer agency, Monographs volumes 1 to 141
37.5%
Five-year survival, stomach cancer, men
Source: Singapore Cancer Registry Annual Report 2023, covering 2019 to 2023
A surgeon’s perspective
H. pylori is one of the most underdiagnosed conditions I encounter in clinical practice. In my experience performing gastroscopies, up to 30% of patients who come in for an upper GI assessment turn out to have H. pylori, many of them with no symptoms at all, and no idea they were carrying it.
That last part is the problem. The absence of symptoms does not mean the infection is benign. What I often find on gastroscopy in these patients is pronounced inflammation of the stomach lining and duodenum, sometimes with erosions, which is early damage that precedes ulcers. In more severe cases, they may present with severe pain and even bleeding due to ulcers.
Long-term H. pylori infection is associated with chronic inflammation, which over time can progress to intestinal metaplasia, a pre-cancerous state of the stomach lining.
That is what makes H. pylori worth taking seriously, even when you feel fine.
What is H. pylori?
H. pylori is a spiral-shaped bacterium that colonises the stomach lining and the duodenum, the first section of the small intestine. To survive in such an acidic environment, it produces enzymes that neutralise the stomach acid immediately around it, allowing it to persist for years, often decades, without treatment and without causing obvious symptoms.
How common is H. pylori in Singapore? The seroprevalence rate here is 31%, reported by Chew and colleagues in the Singapore Medical Journal in 2017, so close to one person in three is carrying it. Prevalence rises with age in every ethnic group in Singapore, which Kang and colleagues showed in the Journal of Gastroenterology and Hepatology in 1997. It is one of the more prevalent chronic bacterial infections in the local population.
Transmission most often occurs through oral-to-oral contact (shared utensils, close personal contact) or faecal-to-oral routes, in settings with poor sanitation or crowded living conditions. Infections acquired in childhood often persist into adulthood without causing symptoms. Without treatment, H. pylori rarely resolves on its own.
Why asymptomatic H. pylori still matters
This is the point most health information gets wrong. The majority of people with H. pylori have no symptoms. This is often interpreted as reassurance. It should not be.
On gastroscopy, patients with no symptoms frequently show significant inflammation of the stomach and duodenal lining, and in some cases erosions, which are shallow breaks in the mucosal surface that are precursors to ulcers. This damage is happening silently.
Chronic H. pylori-associated inflammation is a well-established driver of intestinal metaplasia, a condition where the normal stomach lining is gradually replaced by intestinal-type cells. Intestinal metaplasia is a recognised precancerous state and is the change I am most concerned about detecting. It does not cause symptoms. The only way to find it is to look.
This is why I do not treat H. pylori as a condition that only matters when it hurts.
Common H. pylori symptoms in Singapore
When H. pylori symptoms do appear, they typically arise because the infection has progressed to gastritis or peptic ulcer disease. The most common include:
- A gnawing or burning sensation in the upper abdomen, particularly on an empty stomach
- Persistent bloating or a feeling of fullness after eating only a small amount
- Nausea or vomiting
- Frequent burping
- Loss of appetite
- Unexplained weight loss
- Dark or tarry stools, which may indicate bleeding and warrant urgent medical attention
Who should get tested for H. pylori in Singapore?
My approach is as follows. Patients with no symptoms can opt for a breath test. It is accurate, non-invasive, and gives a clear result on active infection. Symptomatic patients should have a gastroscopy, because the test answers more than one question at once: it confirms H. pylori, and it lets me directly assess the severity of inflammation, check for erosions or ulcers, and look for intestinal metaplasia.
Beyond symptomatic patients, testing is also appropriate for:
- Individuals with a personal or family history of gastric cancer
- Those with close, prolonged contact with a confirmed H. pylori carrier
- Patients on long-term NSAIDs or aspirin, which increase the risk of ulcer complications in the presence of H. pylori
- Anyone over 45 who has never been tested, given the rise in prevalence with age
H. pylori testing addresses the upper GI tract specifically. Patients who also present with lower abdominal pain or changes in bowel habits should discuss the full symptom picture with a specialist, as these may point to separate or co-existing conditions.
How can I check for H. pylori in Singapore?
There are several ways to test for H. pylori. The right method depends on your symptoms, medical history, and whether a broader upper GI assessment is clinically indicated.
| Test | What it shows | What to know |
|---|---|---|
| Urea breath test | Detects active infection. No sedation, 15 to 30 minutes. | Proton pump inhibitors stop two weeks before, antibiotics four weeks before, or the result can be a false negative. |
| Stool antigen test | Detects H. pylori antigens in a sample you can collect at home. | A reliable alternative where breath testing is not tolerated or not available. Certain medications must still be paused first. |
| Blood antibody test | Detects antibodies to past or current infection. A standard blood draw. | Cannot reliably confirm active infection, or that eradication has worked after treatment. |
| Gastroscopy with biopsy | Confirms infection and shows the stomach lining directly, with tissue samples taken. | Sedation is used for comfort. It is the only one of the four that can find inflammation, erosions, ulcers or intestinal metaplasia. |
15 to 30
Minutes, urea breath test
Source: Dr Sulaiman Bin Yusof, clinical practice
Drink the urea solution
No sedation at any point
Wait about 15 minutes
The bacteria break the urea down
Second breath sample
Carbon dioxide is measured
Urea breath test
The H. pylori breath test is widely regarded as the most accurate non-invasive method for detecting active infection. The patient drinks a urea solution; if H. pylori is present, the bacteria break it down and release carbon dioxide, which is detected in a second breath sample taken approximately 15 minutes later. The entire procedure may take between 15 and 30 minutes and requires no sedation.
One preparation requirement: proton pump inhibitors should be stopped at least two weeks before testing; antibiotics at least four weeks before. Both can suppress H. pylori activity and produce a false negative result.
On how accurate that is: pooling eleven studies in Asian populations, Abd Rahim and colleagues reported in Annals of Global Health in 2019 that the carbon-13 urea breath test was 97% sensitive and 96% specific. Roughly three infections in a hundred are missed, which is why the preparation rules above matter so much. Get them wrong and you push your own result into that three.
Stool antigen test
A stool sample is tested for H. pylori antigens (proteins specific to the bacteria) using either a standard stool antigen test or a PCR-based stool test. Both are non-invasive and can be completed with a sample collected at home.
This is a reliable alternative for patients who cannot tolerate breath testing or where breath test facilities are unavailable. As with the breath test, certain medications must be paused before testing.
Blood antibody test
A standard blood draw is sent to a laboratory for H. pylori-specific antibodies. The H. pylori blood test is widely offered and simple to perform.
The key limitation: the test detects antibodies to past or current infection and cannot reliably confirm whether an active infection is present or whether eradication has been successful after treatment. It is generally less preferred than the breath or stool test for diagnosing active infection, though it remains useful in certain clinical contexts.
Gastroscopy with biopsy
Gastroscopy involves passing a thin flexible scope through the mouth into the stomach and duodenum, allowing direct visualisation and the collection of small tissue samples (biopsies) for H. pylori testing. Sedation is used for comfort during the procedure.
I recommend gastroscopy for symptomatic patients, and for those with alarm symptoms, a history of peptic ulcers, or a family history of gastric cancer. The reason is clinical: gastroscopy answers more than the H. pylori question. It lets me directly assess the stomach lining for inflammation, erosions, ulcers, and intestinal metaplasia, none of which a breath test or a blood test can detect. If you have symptoms, a breath test alone is not enough information.
Patients often ask what an upper endoscopy costs before they book one. I have set the full breakdown out in a separate guide to what endoscopy costs in Singapore.

1 in 2,500
Perforation, at the worst reported rate
Source: Waddingham and colleagues, BMJ Open Gastroenterology, 2022, reviewing prospective multicentre data
How H. pylori is treated
Treatment involves a combination of a proton pump inhibitor (to reduce stomach acid and support healing) and two antibiotics, taken over two weeks. That fortnight is not arbitrary. The Singapore standard used to be one week, and Ang and colleagues set out in Gut and Liver in 2021 why it was lengthened: antibiotic resistance had crept up far enough that the shorter course no longer cleared the infection reliably. The course must be completed in full; stopping early may increase the risk of the infection returning and of antibiotic resistance developing.
It works, and the honest answer is a published number a reader can check, not an assurance. Pei and colleagues reported in the Journal of Digestive Diseases in 2022 that two-week first-line therapy cleared the infection in 91.7% of patients treated in Singapore in 2019 and 2020, 891 of 972. The same study is the reason the regimen still holds here at all: clarithromycin resistance locally sat at 13.7%, under the 15% threshold above which the regimen would have to change.
Once treatment is finished, a follow-up test is arranged to confirm eradication. This is performed at least four weeks after completing antibiotic treatment, using either a urea breath test or a stool antigen test. Eradication confirmation is a required clinical step, and the 91.7% above is exactly why: roughly one course in twelve does not work, and testing is the only way to know whether yours was the one.
Where first-line treatment does not succeed, second-line regimens are available. I will advise on the next step based on your clinical picture and, where relevant, local antibiotic resistance patterns.
| Component | What it does | For how long |
|---|---|---|
| Proton pump inhibitor | Reduces stomach acid and supports healing. | Two weeks, together with the antibiotics. |
| Two antibiotics | Clear the infection. The full course must be completed even if you feel better before it ends. | Two weeks. Stopping early may increase the risk of the infection returning and of antibiotic resistance developing. |
| Confirmatory breath or stool test | Verifies that eradication has worked. Roughly one course in twelve does not, and testing is the only way to know. | At least four weeks after the antibiotic course ends. |
91.7%
Cleared by the two-week course, Singapore
Source: Pei and colleagues, Journal of Digestive Diseases, 2022, 891 of 972 patients treated in 2019 and 2020
Infection confirmed
By breath test, stool test or biopsy
Fourteen days
One acid blocker and two antibiotics
Wait four weeks
Before the confirmatory test
Eradication confirmed
Breath test or stool antigen test
Frequently asked questions about H. pylori
Can H. pylori go away on its own without treatment?
In the majority of cases, H. pylori does not resolve without treatment. The bacteria are adapted to survive in the acidic environment of the stomach, and without an appropriate antibiotic regimen the infection may persist indefinitely. Spontaneous clearance is documented but extremely rare in adults. More importantly, the longer the infection persists, the greater the cumulative mucosal damage. Early detection gives us the opportunity to intervene before that progression occurs.
Do I need to fast before I go for an H. pylori breath test?
Yes. You will typically be asked to fast for at least four hours before the test. Antibiotics and proton pump inhibitors should be avoided for two to four weeks prior, as these can suppress H. pylori activity and produce a false negative result. Specific preparation instructions will be provided at the time of booking.
If I have no symptoms, do I still need to be tested?
Potentially, yes. The absence of symptoms does not mean the infection is inactive or harmless. On gastroscopy, many asymptomatic H. pylori carriers show significant inflammation and early mucosal damage. Intestinal metaplasia, a precancerous change in the stomach lining, can develop silently over time with chronic infection. If you are over 45, have a family history of gastric cancer, or have never been tested, a consultation is a reasonable next step.
What is the difference between a breath test and a gastroscopy for H. pylori?
A breath test confirms whether H. pylori is present. It is accurate, non-invasive, and appropriate for patients with no symptoms. A gastroscopy does the same, but it also allows direct visualisation of the stomach lining, which means I can assess the severity of inflammation, identify erosions or ulcers, and check for intestinal metaplasia. For symptomatic patients, gastroscopy provides additional clinical information that a breath test alone may not sufficiently offer.
Can I treat H. pylori with home remedies or natural treatments?
This is a question I get often, and the honest answer is no, not as a standalone treatment.
Several natural substances, including garlic, Manuka honey, and certain plant extracts, have shown antibacterial activity against H. pylori in laboratory settings. The problem is that laboratory results do not translate to clinical eradication. The concentrations needed to inhibit H. pylori in a petri dish are simply not achievable by consuming these substances, and no clinical trial has demonstrated that any home remedy reliably eradicates H. pylori in humans.
Probiotics are the most credible adjacent topic. Evidence from multiple randomised trials suggests that certain probiotic strains (particularly Lactobacillus species), when taken alongside standard antibiotic triple therapy, can modestly improve eradication rates and reduce treatment side effects such as diarrhoea and nausea. The critical distinction is that probiotics work as an adjunct to antibiotic treatment, not as a replacement for it.
The more important concern is delay. H. pylori causes progressive mucosal damage and can drive intestinal metaplasia without causing any symptoms. Spending months on home remedies can delay an otherwise confirmed diagnosis and treatment, during which mucosal damage may continue. If you suspect you have H. pylori, the right step is to get tested and, if confirmed, complete a proper eradication course.
Is H. pylori linked to stomach cancer?
Yes. H. pylori is classified as a Group 1 carcinogen by the International Agency for Research on Cancer, the World Health Organisation's cancer agency, which lists it as carrying sufficient evidence in humans for cancer of the stomach. The mechanism runs through chronic inflammation, intestinal metaplasia, and dysplasia before reaching gastric cancer, a progression that can take years or decades and is largely silent. Eradicating H. pylori, particularly before intestinal metaplasia develops, is associated with a meaningful reduction in gastric cancer risk. Ford and colleagues pooled eight randomised trials in Gastroenterology in 2025 and found about a third fewer gastric cancers among those treated.
For scale on the other side of that: over 2019 to 2023 stomach cancer was the eighth most common cancer in Singapore men and the sixth most common cause of cancer death in men, and five-year survival was 37.5%. Those figures are from the Singapore Cancer Registry Annual Report 2023.
Testing even in the absence of symptoms remains clinically warranted for this reason.
How long does H. pylori treatment take?
The standard treatment course in Singapore is two weeks, consisting of a proton pump inhibitor combined with two antibiotics. It used to be one week. Chew and colleagues set the two-week standard out in the Singapore Medical Journal in 2017, and Ang and colleagues explained why in Gut and Liver in 2021: as resistance crept up, the shorter course stopped clearing the infection reliably, so the duration was lengthened rather than the regimen abandoned. The full course must be completed even if you feel better before it ends. A confirmatory test is then performed at least four weeks after finishing treatment to verify eradication.
It is worth knowing how well it works. Pei and colleagues reported in the Journal of Digestive Diseases in 2022 that two-week first-line therapy cleared the infection in 91.7% of patients treated locally in 2019 and 2020, 891 of 972. That is also why the confirmatory test matters: roughly one course in twelve does not work, and the only way to know which is to test.
References
- 1. Bacha D, et al. Chronic gastritis classifications. Tunisie Medicale, 2018. PubMed 30430483
- 2. Pimentel-Nunes P, et al. Management of epithelial precancerous conditions and lesions in the stomach (MAPS II). Endoscopy, 2019. PubMed 30841008
- 3. Dinis-Ribeiro M, et al. Management of epithelial precancerous conditions and early neoplasia of the stomach (MAPS III). Endoscopy, 2025. PubMed 40112834
- 4. Takeuchi H, et al. Natural products and food components with anti-Helicobacter pylori activities. World Journal of Gastroenterology, 2014. PubMed 25083070
- 5. Ismail NI, et al. Probiotic containing Lactobacillus reuteri DSM 17648 as an adjunct treatment for Helicobacter pylori infection: a randomised, double-blind, placebo-controlled trial. Helicobacter, 2023. PubMed 37614081
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Where this leads.
The author

Dr Sulaiman Bin Yusof
Senior Consultant Colorectal and General Surgeon with Colorectal Clinic Associates, Singapore, and over 20 years in surgery across public and private practice. He performs gastroscopy as part of his upper GI assessment.
He wrote this article and is responsible for its clinical content.
- Qualifications
- MBChB (Sheffield)
- M.Med (Surgery)
- FRCSEd (General Surgery)
- Fellowship
- Peter MacCallum Cancer Centre, Melbourne
- Previously
- Former Director of Endoscopy, Changi General Hospital
- Also
- Visiting Consultant, Changi General Hospital
Getting seen
Speak to a colorectal specialist.
If you have been experiencing any of the symptoms described above, or if you fall into one of the risk groups outlined, a consultation is the appropriate next step.
I am a Senior Consultant Colorectal and General Surgeon practising at Parkway East Hospital, Gleneagles Hospital, Mount Elizabeth Novena, Mount Alvernia Hospital, and Farrer Park Hospital. I perform gastroscopy as part of my upper GI assessment and can advise on the most appropriate H. pylori test for your situation. If infection is confirmed, I will outline a clear, evidence-based treatment plan and arrange follow-up to confirm eradication.
Message the clinic on WhatsApp to arrange a consultation, or see where the clinics are.
+65 8491 1525